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MueLu_RepartitionFactory_def.hpp
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46#ifndef MUELU_REPARTITIONFACTORY_DEF_HPP
47#define MUELU_REPARTITIONFACTORY_DEF_HPP
48
49#include <algorithm>
50#include <iostream>
51#include <sstream>
52
53#include "MueLu_RepartitionFactory_decl.hpp" // TMP JG NOTE: before other includes, otherwise I cannot test the fwd declaration in _def
54
55#ifdef HAVE_MPI
56#include <Teuchos_DefaultMpiComm.hpp>
57#include <Teuchos_CommHelpers.hpp>
58#include <Teuchos_Details_MpiTypeTraits.hpp>
59
60#include <Xpetra_Map.hpp>
61#include <Xpetra_MapFactory.hpp>
62#include <Xpetra_MultiVectorFactory.hpp>
63#include <Xpetra_VectorFactory.hpp>
64#include <Xpetra_Import.hpp>
65#include <Xpetra_ImportFactory.hpp>
66#include <Xpetra_Export.hpp>
67#include <Xpetra_ExportFactory.hpp>
68#include <Xpetra_Matrix.hpp>
69#include <Xpetra_MatrixFactory.hpp>
70
71#include "MueLu_Utilities.hpp"
72
73#include "MueLu_CloneRepartitionInterface.hpp"
74
75#include "MueLu_Level.hpp"
76#include "MueLu_MasterList.hpp"
77#include "MueLu_Monitor.hpp"
78#include "MueLu_PerfUtils.hpp"
79
80namespace MueLu {
81
82 template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
84 RCP<ParameterList> validParamList = rcp(new ParameterList());
85
86#define SET_VALID_ENTRY(name) validParamList->setEntry(name, MasterList::getEntry(name))
87 SET_VALID_ENTRY("repartition: print partition distribution");
88 SET_VALID_ENTRY("repartition: remap parts");
89 SET_VALID_ENTRY("repartition: remap num values");
90 SET_VALID_ENTRY("repartition: remap accept partition");
91 SET_VALID_ENTRY("repartition: node repartition level");
92#undef SET_VALID_ENTRY
93
94 validParamList->set< RCP<const FactoryBase> >("A", Teuchos::null, "Factory of the matrix A");
95 validParamList->set< RCP<const FactoryBase> >("number of partitions", Teuchos::null, "Instance of RepartitionHeuristicFactory.");
96 validParamList->set< RCP<const FactoryBase> >("Partition", Teuchos::null, "Factory of the partition");
97
98 return validParamList;
99 }
100
101 template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
103 Input(currentLevel, "A");
104 Input(currentLevel, "number of partitions");
105 Input(currentLevel, "Partition");
106 }
107
108 template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
110 FactoryMonitor m(*this, "Build", currentLevel);
111
112 const Teuchos::ParameterList & pL = GetParameterList();
113 // Access parameters here to make sure that we set the parameter entry flag to "used" even in case of short-circuit evaluation.
114 // TODO (JG): I don't really know if we want to do this.
115 bool remapPartitions = pL.get<bool> ("repartition: remap parts");
116
117 // TODO: We only need a CrsGraph. This class does not have to be templated on Scalar types.
118 RCP<Matrix> A = Get< RCP<Matrix> >(currentLevel, "A");
119 RCP<const Map> rowMap = A->getRowMap();
120 GO indexBase = rowMap->getIndexBase();
121 Xpetra::UnderlyingLib lib = rowMap->lib();
122
123 RCP<const Teuchos::Comm<int> > origComm = rowMap->getComm();
124 RCP<const Teuchos::Comm<int> > comm = origComm;
125
126 int myRank = comm->getRank();
127 int numProcs = comm->getSize();
128
129 RCP<const Teuchos::MpiComm<int> > tmpic = rcp_dynamic_cast<const Teuchos::MpiComm<int> >(comm);
130 TEUCHOS_TEST_FOR_EXCEPTION(tmpic == Teuchos::null, Exceptions::RuntimeError, "Cannot cast base Teuchos::Comm to Teuchos::MpiComm object.");
131 RCP<const Teuchos::OpaqueWrapper<MPI_Comm> > rawMpiComm = tmpic->getRawMpiComm();
132
134 int numPartitions = Get<int>(currentLevel, "number of partitions");
135
136 // ======================================================================================================
137 // Construct decomposition vector
138 // ======================================================================================================
139 RCP<GOVector> decomposition = Get<RCP<GOVector> >(currentLevel, "Partition");
140
141 // check which factory provides "Partition"
142 if(remapPartitions == true && Teuchos::rcp_dynamic_cast<const CloneRepartitionInterface>(GetFactory("Partition")) != Teuchos::null) {
143 // if "Partition" is provided by a CloneRepartitionInterface class we have to switch of remapPartitions
144 // as we can assume the processor Ids in Partition to be the expected ones. If we would do remapping we
145 // would get different processors for the different blocks which screws up matrix-matrix multiplication.
146 remapPartitions = false;
147 }
148
149 // check special cases
150 if (numPartitions == 1) {
151 // Trivial case: decomposition is the trivial one, all zeros. We skip the call to Zoltan_Interface
152 // (this is mostly done to avoid extra output messages, as even if we didn't skip there is a shortcut
153 // in Zoltan[12]Interface).
154 // TODO: We can probably skip more work in this case (like building all extra data structures)
155 GetOStream(Warnings0) << "Only one partition: Skip call to the repartitioner." << std::endl;
156 } else if (numPartitions == -1) {
157 // No repartitioning necessary: decomposition should be Teuchos::null
158 GetOStream(Warnings0) << "No repartitioning necessary: partitions were left unchanged by the repartitioner" << std::endl;
159 Set<RCP<const Import> >(currentLevel, "Importer", Teuchos::null);
160 return;
161 }
162
163 // If we're doing node away, we need to be sure to get the mapping to the NodeComm's rank 0.
164 const int nodeRepartLevel = pL.get<int> ("repartition: node repartition level");
165 if(currentLevel.GetLevelID() == nodeRepartLevel) {
166 // NodePartitionInterface returns the *ranks* of the guy who gets the info, not the *partition number*
167 // In a sense, we've already done remap here.
168
169 // FIXME: We need a low-comm import construction
170 remapPartitions = false;
171 }
172
173 // ======================================================================================================
174 // Remap if necessary
175 // ======================================================================================================
176 // From a user perspective, we want user to not care about remapping, thinking of it as only a performance feature.
177 // There are two problems, however.
178 // (1) Next level aggregation depends on the order of GIDs in the vector, if one uses "natural" or "random" orderings.
179 // This also means that remapping affects next level aggregation, despite the fact that the _set_ of GIDs for
180 // each partition is the same.
181 // (2) Even with the fixed order of GIDs, the remapping may influence the aggregation for the next-next level.
182 // Let us consider the following example. Lets assume that when we don't do remapping, processor 0 would have
183 // GIDs {0,1,2}, and processor 1 GIDs {3,4,5}, and if we do remapping processor 0 would contain {3,4,5} and
184 // processor 1 {0,1,2}. Now, when we run repartitioning algorithm on the next level (say Zoltan1 RCB), it may
185 // be dependent on whether whether it is [{0,1,2}, {3,4,5}] or [{3,4,5}, {0,1,2}]. Specifically, the tie-breaking
186 // algorithm can resolve these differently. For instance, running
187 // mpirun -np 5 ./MueLu_ScalingTestParamList.exe --xml=easy_sa.xml --nx=12 --ny=12 --nz=12
188 // with
189 // <ParameterList name="MueLu">
190 // <Parameter name="coarse: max size" type="int" value="1"/>
191 // <Parameter name="repartition: enable" type="bool" value="true"/>
192 // <Parameter name="repartition: min rows per proc" type="int" value="2"/>
193 // <ParameterList name="level 1">
194 // <Parameter name="repartition: remap parts" type="bool" value="false/true"/>
195 // </ParameterList>
196 // </ParameterList>
197 // produces different repartitioning for level 2.
198 // This different repartitioning may then escalate into different aggregation for the next level.
199 //
200 // We fix (1) by fixing the order of GIDs in a vector by sorting the resulting vector.
201 // Fixing (2) is more complicated.
202 // FIXME: Fixing (2) in Zoltan may not be enough, as we may use some arbitration in MueLu,
203 // for instance with CoupledAggregation. What we really need to do is to use the same order of processors containing
204 // the same order of GIDs. To achieve that, the newly created subcommunicator must be conforming with the order. For
205 // instance, if we have [{0,1,2}, {3,4,5}], we create a subcommunicator where processor 0 gets rank 0, and processor 1
206 // gets rank 1. If, on the other hand, we have [{3,4,5}, {0,1,2}], we assign rank 1 to processor 0, and rank 0 to processor 1.
207 // This rank permutation requires help from Epetra/Tpetra, both of which have no such API in place.
208 // One should also be concerned that if we had such API in place, rank 0 in subcommunicator may no longer be rank 0 in
209 // MPI_COMM_WORLD, which may lead to issues for logging.
210 if (remapPartitions) {
211 SubFactoryMonitor m1(*this, "DeterminePartitionPlacement", currentLevel);
212
213 bool acceptPartition = pL.get<bool>("repartition: remap accept partition");
214 bool allSubdomainsAcceptPartitions;
215 int localNumAcceptPartition = acceptPartition;
216 int globalNumAcceptPartition;
217 MueLu_sumAll(comm, localNumAcceptPartition, globalNumAcceptPartition);
218 GetOStream(Statistics2) << "Number of ranks that accept partitions: " << globalNumAcceptPartition << std::endl;
219 if (globalNumAcceptPartition < numPartitions) {
220 GetOStream(Warnings0) << "Not enough ranks are willing to accept a partition, allowing partitions on all ranks." << std::endl;
221 acceptPartition = true;
222 allSubdomainsAcceptPartitions = true;
223 } else if (numPartitions > numProcs) {
224 // We are trying to repartition to a larger communicator.
225 allSubdomainsAcceptPartitions = true;
226 } else {
227 allSubdomainsAcceptPartitions = false;
228 }
229
230 DeterminePartitionPlacement(*A, *decomposition, numPartitions, acceptPartition, allSubdomainsAcceptPartitions);
231 }
232
233 // ======================================================================================================
234 // Construct importer
235 // ======================================================================================================
236 // At this point, the following is true:
237 // * Each processors owns 0 or 1 partitions
238 // * If a processor owns a partition, that partition number is equal to the processor rank
239 // * The decomposition vector contains the partitions ids that the corresponding GID belongs to
240
241 ArrayRCP<const GO> decompEntries;
242 if (decomposition->getLocalLength() > 0)
243 decompEntries = decomposition->getData(0);
244
245#ifdef HAVE_MUELU_DEBUG
246 // Test range of partition ids
247 int incorrectRank = -1;
248 for (int i = 0; i < decompEntries.size(); i++)
249 if (decompEntries[i] >= numProcs || decompEntries[i] < 0) {
250 incorrectRank = myRank;
251 break;
252 }
253
254 int incorrectGlobalRank = -1;
255 MueLu_maxAll(comm, incorrectRank, incorrectGlobalRank);
256 TEUCHOS_TEST_FOR_EXCEPTION(incorrectGlobalRank >- 1, Exceptions::RuntimeError, "pid " + Teuchos::toString(incorrectGlobalRank) + " encountered a partition number is that out-of-range");
257#endif
258
259 Array<GO> myGIDs;
260 myGIDs.reserve(decomposition->getLocalLength());
261
262 // Step 0: Construct mapping
263 // part number -> GIDs I own which belong to this part
264 // NOTE: my own part GIDs are not part of the map
265 typedef std::map<GO, Array<GO> > map_type;
266 map_type sendMap;
267 for (LO i = 0; i < decompEntries.size(); i++) {
268 GO id = decompEntries[i];
269 GO GID = rowMap->getGlobalElement(i);
270
271 if (id == myRank)
272 myGIDs .push_back(GID);
273 else
274 sendMap[id].push_back(GID);
275 }
276 decompEntries = Teuchos::null;
277
278 if (IsPrint(Statistics2)) {
279 GO numLocalKept = myGIDs.size(), numGlobalKept, numGlobalRows = A->getGlobalNumRows();
280 MueLu_sumAll(comm,numLocalKept, numGlobalKept);
281 GetOStream(Statistics2) << "Unmoved rows: " << numGlobalKept << " / " << numGlobalRows << " (" << 100*Teuchos::as<double>(numGlobalKept)/numGlobalRows << "%)" << std::endl;
282 }
283
284 int numSend = sendMap.size(), numRecv;
285
286 // Arrayify map keys
287 Array<GO> myParts(numSend), myPart(1);
288 int cnt = 0;
289 myPart[0] = myRank;
290 for (typename map_type::const_iterator it = sendMap.begin(); it != sendMap.end(); it++)
291 myParts[cnt++] = it->first;
292
293 // Step 1: Find out how many processors send me data
294 // partsIndexBase starts from zero, as the processors ids start from zero
295 GO partsIndexBase = 0;
296 RCP<Map> partsIHave = MapFactory ::Build(lib, Teuchos::OrdinalTraits<Xpetra::global_size_t>::invalid(), myParts(), partsIndexBase, comm);
297 RCP<Map> partsIOwn = MapFactory ::Build(lib, numProcs, myPart(), partsIndexBase, comm);
298 RCP<Export> partsExport = ExportFactory::Build(partsIHave, partsIOwn);
299
300 RCP<GOVector> partsISend = Xpetra::VectorFactory<GO, LO, GO, NO>::Build(partsIHave);
301 RCP<GOVector> numPartsIRecv = Xpetra::VectorFactory<GO, LO, GO, NO>::Build(partsIOwn);
302 if (numSend) {
303 ArrayRCP<GO> partsISendData = partsISend->getDataNonConst(0);
304 for (int i = 0; i < numSend; i++)
305 partsISendData[i] = 1;
306 }
307 (numPartsIRecv->getDataNonConst(0))[0] = 0;
308
309 numPartsIRecv->doExport(*partsISend, *partsExport, Xpetra::ADD);
310 numRecv = (numPartsIRecv->getData(0))[0];
311
312 // Step 2: Get my GIDs from everybody else
313 MPI_Datatype MpiType = Teuchos::Details::MpiTypeTraits<GO>::getType();
314 int msgTag = 12345; // TODO: use Comm::dup for all internal messaging
315
316 // Post sends
317 Array<MPI_Request> sendReqs(numSend);
318 cnt = 0;
319 for (typename map_type::iterator it = sendMap.begin(); it != sendMap.end(); it++)
320 MPI_Isend(static_cast<void*>(it->second.getRawPtr()), it->second.size(), MpiType, Teuchos::as<GO>(it->first), msgTag, *rawMpiComm, &sendReqs[cnt++]);
321
322 map_type recvMap;
323 size_t totalGIDs = myGIDs.size();
324 for (int i = 0; i < numRecv; i++) {
325 MPI_Status status;
326 MPI_Probe(MPI_ANY_SOURCE, msgTag, *rawMpiComm, &status);
327
328 // Get rank and number of elements from status
329 int fromRank = status.MPI_SOURCE, count;
330 MPI_Get_count(&status, MpiType, &count);
331
332 recvMap[fromRank].resize(count);
333 MPI_Recv(static_cast<void*>(recvMap[fromRank].getRawPtr()), count, MpiType, fromRank, msgTag, *rawMpiComm, &status);
334
335 totalGIDs += count;
336 }
337
338 // Do waits on send requests
339 if (numSend) {
340 Array<MPI_Status> sendStatuses(numSend);
341 MPI_Waitall(numSend, sendReqs.getRawPtr(), sendStatuses.getRawPtr());
342 }
343
344 // Merge GIDs
345 myGIDs.reserve(totalGIDs);
346 for (typename map_type::const_iterator it = recvMap.begin(); it != recvMap.end(); it++) {
347 int offset = myGIDs.size(), len = it->second.size();
348 if (len) {
349 myGIDs.resize(offset + len);
350 memcpy(myGIDs.getRawPtr() + offset, it->second.getRawPtr(), len*sizeof(GO));
351 }
352 }
353 // NOTE 2: The general sorting algorithm could be sped up by using the knowledge that original myGIDs and all received chunks
354 // (i.e. it->second) are sorted. Therefore, a merge sort would work well in this situation.
355 std::sort(myGIDs.begin(), myGIDs.end());
356
357 // Step 3: Construct importer
358 RCP<Map> newRowMap = MapFactory ::Build(lib, rowMap->getGlobalNumElements(), myGIDs(), indexBase, origComm);
359 RCP<const Import> rowMapImporter;
360
361 RCP<const BlockedMap> blockedRowMap = Teuchos::rcp_dynamic_cast<const BlockedMap>(rowMap);
362
363 {
364 SubFactoryMonitor m1(*this, "Import construction", currentLevel);
365 // Generate a nonblocked rowmap if we need one
366 if(blockedRowMap.is_null())
367 rowMapImporter = ImportFactory::Build(rowMap, newRowMap);
368 else {
369 rowMapImporter = ImportFactory::Build(blockedRowMap->getMap(), newRowMap);
370 }
371 }
372
373 // If we're running BlockedCrs we should chop up the newRowMap into a newBlockedRowMap here (and do likewise for importers)
374 if(!blockedRowMap.is_null()) {
375 SubFactoryMonitor m1(*this, "Blocking newRowMap and Importer", currentLevel);
376 RCP<const BlockedMap> blockedTargetMap = MueLu::UtilitiesBase<Scalar,LocalOrdinal,GlobalOrdinal,Node>::GeneratedBlockedTargetMap(*blockedRowMap,*rowMapImporter);
377
378 // NOTE: This code qualifies as "correct but not particularly performant" If this needs to be sped up, we can probably read data from the existing importer to
379 // build sub-importers rather than generating new ones ex nihilo
380 size_t numBlocks = blockedRowMap->getNumMaps();
381 std::vector<RCP<const Import> > subImports(numBlocks);
382
383 for(size_t i=0; i<numBlocks; i++) {
384 RCP<const Map> source = blockedRowMap->getMap(i);
385 RCP<const Map> target = blockedTargetMap->getMap(i);
386 subImports[i] = ImportFactory::Build(source,target);
387 }
388 Set(currentLevel,"SubImporters",subImports);
389 }
390
391
392 Set(currentLevel, "Importer", rowMapImporter);
393
394 // ======================================================================================================
395 // Print some data
396 // ======================================================================================================
397 if (!rowMapImporter.is_null() && IsPrint(Statistics2)) {
398 // int oldRank = SetProcRankVerbose(rebalancedAc->getRowMap()->getComm()->getRank());
399 GetOStream(Statistics2) << PerfUtils::PrintImporterInfo(rowMapImporter, "Importer for rebalancing");
400 // SetProcRankVerbose(oldRank);
401 }
402 if (pL.get<bool>("repartition: print partition distribution") && IsPrint(Statistics2)) {
403 // Print the grid of processors
404 GetOStream(Statistics2) << "Partition distribution over cores (ownership is indicated by '+')" << std::endl;
405
406 char amActive = (myGIDs.size() ? 1 : 0);
407 std::vector<char> areActive(numProcs, 0);
408 MPI_Gather(&amActive, 1, MPI_CHAR, &areActive[0], 1, MPI_CHAR, 0, *rawMpiComm);
409
410 int rowWidth = std::min(Teuchos::as<int>(ceil(sqrt(numProcs))), 100);
411 for (int proc = 0; proc < numProcs; proc += rowWidth) {
412 for (int j = 0; j < rowWidth; j++)
413 if (proc + j < numProcs)
414 GetOStream(Statistics2) << (areActive[proc + j] ? "+" : ".");
415 else
416 GetOStream(Statistics2) << " ";
417
418 GetOStream(Statistics2) << " " << proc << ":" << std::min(proc + rowWidth, numProcs) - 1 << std::endl;
419 }
420 }
421
422 } // Build
423
424 //----------------------------------------------------------------------
425 template<typename T, typename W>
426 struct Triplet {
427 T i, j;
428 W v;
429 };
430 template<typename T, typename W>
431 static bool compareTriplets(const Triplet<T,W>& a, const Triplet<T,W>& b) {
432 return (a.v > b.v); // descending order
433 }
434
435 template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
437 DeterminePartitionPlacement(const Matrix& A, GOVector& decomposition, GO numPartitions, bool willAcceptPartition, bool allSubdomainsAcceptPartitions) const {
438 RCP<const Map> rowMap = A.getRowMap();
439
440 RCP<const Teuchos::Comm<int> > comm = rowMap->getComm()->duplicate();
441 int numProcs = comm->getSize();
442
443 RCP<const Teuchos::MpiComm<int> > tmpic = rcp_dynamic_cast<const Teuchos::MpiComm<int> >(comm);
444 TEUCHOS_TEST_FOR_EXCEPTION(tmpic == Teuchos::null, Exceptions::RuntimeError, "Cannot cast base Teuchos::Comm to Teuchos::MpiComm object.");
445 RCP<const Teuchos::OpaqueWrapper<MPI_Comm> > rawMpiComm = tmpic->getRawMpiComm();
446
447 const Teuchos::ParameterList& pL = GetParameterList();
448
449 // maxLocal is a constant which determins the number of largest edges which are being exchanged
450 // The idea is that we do not want to construct the full bipartite graph, but simply a subset of
451 // it, which requires less communication. By selecting largest local edges we hope to achieve
452 // similar results but at a lower cost.
453 const int maxLocal = pL.get<int>("repartition: remap num values");
454 const int dataSize = 2*maxLocal;
455
456 ArrayRCP<GO> decompEntries;
457 if (decomposition.getLocalLength() > 0)
458 decompEntries = decomposition.getDataNonConst(0);
459
460 // Step 1: Sort local edges by weight
461 // Each edge of a bipartite graph corresponds to a triplet (i, j, v) where
462 // i: processor id that has some piece of part with part_id = j
463 // j: part id
464 // v: weight of the edge
465 // We set edge weights to be the total number of nonzeros in rows on this processor which
466 // correspond to this part_id. The idea is that when we redistribute matrix, this weight
467 // is a good approximation of the amount of data to move.
468 // We use two maps, original which maps a partition id of an edge to the corresponding weight,
469 // and a reverse one, which is necessary to sort by edges.
470 std::map<GO,GO> lEdges;
471 if (willAcceptPartition)
472 for (LO i = 0; i < decompEntries.size(); i++)
473 lEdges[decompEntries[i]] += A.getNumEntriesInLocalRow(i);
474
475 // Reverse map, so that edges are sorted by weight.
476 // This results in multimap, as we may have edges with the same weight
477 std::multimap<GO,GO> revlEdges;
478 for (typename std::map<GO,GO>::const_iterator it = lEdges.begin(); it != lEdges.end(); it++)
479 revlEdges.insert(std::make_pair(it->second, it->first));
480
481 // Both lData and gData are arrays of data which we communicate. The data is stored
482 // in pairs, so that data[2*i+0] is the part index, and data[2*i+1] is the corresponding edge weight.
483 // We do not store processor id in data, as we can compute that by looking on the offset in the gData.
484 Array<GO> lData(dataSize, -1), gData(numProcs * dataSize);
485 int numEdges = 0;
486 for (typename std::multimap<GO,GO>::reverse_iterator rit = revlEdges.rbegin(); rit != revlEdges.rend() && numEdges < maxLocal; rit++) {
487 lData[2*numEdges+0] = rit->second; // part id
488 lData[2*numEdges+1] = rit->first; // edge weight
489 numEdges++;
490 }
491
492 // Step 2: Gather most edges
493 // Each processors contributes maxLocal edges by providing maxLocal pairs <part id, weight>, which is of size dataSize
494 MPI_Datatype MpiType = Teuchos::Details::MpiTypeTraits<GO>::getType();
495 MPI_Allgather(static_cast<void*>(lData.getRawPtr()), dataSize, MpiType, static_cast<void*>(gData.getRawPtr()), dataSize, MpiType, *rawMpiComm);
496
497 // Step 3: Construct mapping
498
499 // Construct the set of triplets
500 Teuchos::Array<Triplet<int,int> > gEdges(numProcs * maxLocal);
501 Teuchos::Array<bool> procWillAcceptPartition(numProcs, allSubdomainsAcceptPartitions);
502 size_t k = 0;
503 for (LO i = 0; i < gData.size(); i += 2) {
504 int procNo = i/dataSize; // determine the processor by its offset (since every processor sends the same amount)
505 GO part = gData[i+0];
506 GO weight = gData[i+1];
507 if (part != -1) { // skip nonexistent edges
508 gEdges[k].i = procNo;
509 gEdges[k].j = part;
510 gEdges[k].v = weight;
511 procWillAcceptPartition[procNo] = true;
512 k++;
513 }
514 }
515 gEdges.resize(k);
516
517 // Sort edges by weight
518 // NOTE: compareTriplets is actually a reverse sort, so the edges weight is in decreasing order
519 std::sort(gEdges.begin(), gEdges.end(), compareTriplets<int,int>);
520
521 // Do matching
522 std::map<int,int> match;
523 Teuchos::Array<char> matchedRanks(numProcs, 0), matchedParts(numPartitions, 0);
524 int numMatched = 0;
525 for (typename Teuchos::Array<Triplet<int,int> >::const_iterator it = gEdges.begin(); it != gEdges.end(); it++) {
526 GO rank = it->i;
527 GO part = it->j;
528 if (matchedRanks[rank] == 0 && matchedParts[part] == 0) {
529 matchedRanks[rank] = 1;
530 matchedParts[part] = 1;
531 match[part] = rank;
532 numMatched++;
533 }
534 }
535 GetOStream(Statistics1) << "Number of unassigned partitions before cleanup stage: " << (numPartitions - numMatched) << " / " << numPartitions << std::endl;
536
537 // Step 4: Assign unassigned partitions if necessary.
538 // We do that through desperate matching for remaining partitions:
539 // We select the lowest rank that can still take a partition.
540 // The reason it is done this way is that we don't need any extra communication, as we don't
541 // need to know which parts are valid.
542 if (numPartitions - numMatched > 0) {
543 Teuchos::Array<char> partitionCounts(numPartitions, 0);
544 for (typename std::map<int,int>::const_iterator it = match.begin(); it != match.end(); it++)
545 partitionCounts[it->first] += 1;
546 for (int part = 0, matcher = 0; part < numPartitions; part++) {
547 if (partitionCounts[part] == 0) {
548 // Find first non-matched rank that accepts partitions
549 while (matchedRanks[matcher] || !procWillAcceptPartition[matcher])
550 matcher++;
551
552 match[part] = matcher++;
553 numMatched++;
554 }
555 }
556 }
557
558 TEUCHOS_TEST_FOR_EXCEPTION(numMatched != numPartitions, Exceptions::RuntimeError, "MueLu::RepartitionFactory::DeterminePartitionPlacement: Only " << numMatched << " partitions out of " << numPartitions << " got assigned to ranks.");
559
560 // Step 5: Permute entries in the decomposition vector
561 for (LO i = 0; i < decompEntries.size(); i++)
562 decompEntries[i] = match[decompEntries[i]];
563 }
564
565} // namespace MueLu
566
567#endif //ifdef HAVE_MPI
568
569#endif // MUELU_REPARTITIONFACTORY_DEF_HPP
#define MueLu_maxAll(rcpComm, in, out)
#define MueLu_sumAll(rcpComm, in, out)
#define SET_VALID_ENTRY(name)
Exception throws to report errors in the internal logical of the program.
Timer to be used in factories. Similar to Monitor but with additional timers.
Class that holds all level-specific information.
Definition: MueLu_Level.hpp:99
int GetLevelID() const
Return level number.
Definition: MueLu_Level.cpp:76
static std::string PrintImporterInfo(RCP< const Import > importer, const std::string &msgTag)
void Build(Level &currentLevel) const
Build an object with this factory.
void DeterminePartitionPlacement(const Matrix &A, GOVector &decomposition, GO numPartitions, bool willAcceptPartition=true, bool allSubdomainsAcceptPartitions=true) const
Determine which process should own each partition.
void DeclareInput(Level &currentLevel) const
Determines the data that RepartitionFactory needs, and the factories that generate that data.
RCP< const ParameterList > GetValidParameterList() const
Return a const parameter list of valid parameters that setParameterList() will accept.
Timer to be used in factories. Similar to SubMonitor but adds a timer level by level.
static RCP< const Xpetra::BlockedMap< LocalOrdinal, GlobalOrdinal, Node > > GeneratedBlockedTargetMap(const Xpetra::BlockedMap< LocalOrdinal, GlobalOrdinal, Node > &sourceBlockedMap, const Xpetra::Import< LocalOrdinal, GlobalOrdinal, Node > &Importer)
Namespace for MueLu classes and methods.
static bool compareTriplets(const Triplet< T, W > &a, const Triplet< T, W > &b)
@ Warnings0
Important warning messages (one line)
@ Statistics2
Print even more statistics.
@ Statistics1
Print more statistics.
std::string toString(const T &what)
Little helper function to convert non-string types to strings.