Tpetra parallel linear algebra Version of the Day
Tpetra_Details_getDiagCopyWithoutOffsets_def.hpp
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43
44#ifndef TPETRA_DETAILS_GETDIAGCOPYWITHOUTOFFSETS_DEF_HPP
45#define TPETRA_DETAILS_GETDIAGCOPYWITHOUTOFFSETS_DEF_HPP
46
54
56#include "Tpetra_RowGraph.hpp"
57#include "Tpetra_CrsGraph.hpp"
58#include "Tpetra_RowMatrix.hpp"
59#include "Tpetra_Vector.hpp"
60
61namespace Tpetra {
62namespace Details {
63
64// Work-around for #499: Implementation of one-argument (no offsets)
65// getLocalDiagCopy for the NOT fill-complete case.
66//
67// NOTE (mfh 18 Jul 2016) This calls functions that are NOT GPU device
68// functions! Thus, we do NOT use KOKKOS_INLINE_FUNCTION or
69// KOKKOS_FUNCTION here, because those attempt to mark the functions
70// they modify as CUDA device functions. This functor is ONLY for
71// non-CUDA execution spaces!
72template<class SC, class LO, class GO, class NT>
73class GetLocalDiagCopyWithoutOffsetsNotFillCompleteFunctor {
74public:
75 typedef ::Tpetra::RowMatrix<SC, LO, GO, NT> row_matrix_type;
76 typedef ::Tpetra::Vector<SC, LO, GO, NT> vec_type;
77
78 typedef typename vec_type::impl_scalar_type IST;
79 // The output Vector determines the execution space.
80 typedef typename vec_type::device_type device_type;
81
82private:
83 typedef typename vec_type::dual_view_type::t_host::execution_space host_execution_space;
84 typedef typename vec_type::map_type map_type;
85
86 static bool
87 graphIsSorted (const row_matrix_type& A)
88 {
89 using Teuchos::RCP;
90 using Teuchos::rcp_dynamic_cast;
91 typedef Tpetra::CrsGraph<LO, GO, NT> crs_graph_type;
92 typedef Tpetra::RowGraph<LO, GO, NT> row_graph_type;
93
94 // We conservatively assume not sorted. RowGraph lacks an
95 // "isSorted" predicate, so we can't know for sure unless the cast
96 // to CrsGraph succeeds.
97 bool sorted = false;
98
99 RCP<const row_graph_type> G_row = A.getGraph ();
100 if (! G_row.is_null ()) {
101 RCP<const crs_graph_type> G_crs =
102 rcp_dynamic_cast<const crs_graph_type> (G_row);
103 if (! G_crs.is_null ()) {
104 sorted = G_crs->isSorted ();
105 }
106 }
107
108 return sorted;
109 }
110
111public:
112 // lclNumErrs [out] Total count of errors on this process.
113 GetLocalDiagCopyWithoutOffsetsNotFillCompleteFunctor (LO& lclNumErrs,
114 vec_type& diag,
115 const row_matrix_type& A) :
116 A_ (A),
117 lclRowMap_ (*A.getRowMap ()),
118 lclColMap_ (*A.getColMap ()),
119 sorted_ (graphIsSorted (A))
120 {
121 const LO lclNumRows = static_cast<LO> (diag.getLocalLength ());
122 {
123 const LO matLclNumRows =
124 static_cast<LO> (lclRowMap_.getNodeNumElements ());
125 TEUCHOS_TEST_FOR_EXCEPTION
126 (lclNumRows != matLclNumRows, std::invalid_argument,
127 "diag.getLocalLength() = " << lclNumRows << " != "
128 "A.getRowMap()->getNodeNumElements() = " << matLclNumRows << ".");
129 }
130
131 // Side effects start below this point.
132 D_lcl_ = diag.getLocalViewHost(Access::OverwriteAll);
133 D_lcl_1d_ = Kokkos::subview (D_lcl_, Kokkos::ALL (), 0);
134
135 Kokkos::RangePolicy<host_execution_space, LO> range (0, lclNumRows);
136 lclNumErrs = 0;
137 Kokkos::parallel_reduce (range, *this, lclNumErrs);
138
139 // sync changes back to device, since the user doesn't know that
140 // we had to run on host.
141 //diag.template sync<typename device_type::memory_space> ();
142 }
143
144 void operator () (const LO& lclRowInd, LO& errCount) const {
145 using KokkosSparse::findRelOffset;
146
147 D_lcl_1d_(lclRowInd) = Kokkos::Details::ArithTraits<IST>::zero ();
148 const GO gblInd = lclRowMap_.getGlobalElement (lclRowInd);
149 const LO lclColInd = lclColMap_.getLocalElement (gblInd);
150
151 if (lclColInd == Tpetra::Details::OrdinalTraits<LO>::invalid ()) {
152 errCount++;
153 }
154 else { // row index is also in the column Map on this process
155 typename row_matrix_type::local_inds_host_view_type lclColInds;
156 typename row_matrix_type::values_host_view_type curVals;
157 A_.getLocalRowView(lclRowInd, lclColInds, curVals);
158 LO numEnt = lclColInds.extent(0);
159 // The search hint is always zero, since we only call this
160 // once per row of the matrix.
161 const LO hint = 0;
162 const LO offset =
163 findRelOffset (lclColInds, numEnt, lclColInd, hint, sorted_);
164 if (offset == numEnt) { // didn't find the diagonal column index
165 errCount++;
166 }
167 else {
168 D_lcl_1d_(lclRowInd) = curVals[offset];
169 }
170 }
171 }
172
173private:
174 const row_matrix_type& A_;
175 map_type lclRowMap_;
176 map_type lclColMap_;
177 typename vec_type::dual_view_type::t_host D_lcl_;
178 decltype (Kokkos::subview (D_lcl_, Kokkos::ALL (), 0)) D_lcl_1d_;
179 const bool sorted_;
180};
181
182
183template<class SC, class LO, class GO, class NT>
184LO
186 const ::Tpetra::RowMatrix<SC, LO, GO, NT>& A,
187 const bool debug)
188{
189 using ::Tpetra::Details::gathervPrint;
190 using Teuchos::outArg;
191 using Teuchos::REDUCE_MIN;
192 using Teuchos::reduceAll;
193 typedef GetLocalDiagCopyWithoutOffsetsNotFillCompleteFunctor<SC,
194 LO, GO, NT> functor_type;
195
196 // The functor's constructor does error checking and executes the
197 // thread-parallel kernel.
198
199 LO lclNumErrs = 0;
200
201 if (debug) {
202 int lclSuccess = 1;
203 int gblSuccess = 0;
204 std::ostringstream errStrm;
205 Teuchos::RCP<const Teuchos::Comm<int> > commPtr = A.getComm ();
206 if (commPtr.is_null ()) {
207 return lclNumErrs; // this process does not participate
208 }
209 const Teuchos::Comm<int>& comm = *commPtr;
210
211 try {
212 functor_type functor (lclNumErrs, diag, A);
213 }
214 catch (std::exception& e) {
215 lclSuccess = -1;
216 errStrm << "Process " << A.getComm ()->getRank () << ": "
217 << e.what () << std::endl;
218 }
219 if (lclNumErrs != 0) {
220 lclSuccess = 0;
221 }
222
223 reduceAll<int, int> (comm, REDUCE_MIN, lclSuccess, outArg (gblSuccess));
224 if (gblSuccess == -1) {
225 if (comm.getRank () == 0) {
226 // We gather into std::cerr, rather than using an
227 // std::ostringstream, because there might be a lot of MPI
228 // processes. It could take too much memory to gather all the
229 // messages to Process 0 before printing. gathervPrint gathers
230 // and prints one message at a time, thus saving memory. I
231 // don't want to run out of memory while trying to print an
232 // error message; that would hide the real problem.
233 std::cerr << "getLocalDiagCopyWithoutOffsetsNotFillComplete threw an "
234 "exception on one or more MPI processes in the matrix's comunicator."
235 << std::endl;
236 }
237 gathervPrint (std::cerr, errStrm.str (), comm);
238 // Don't need to print anything here, since we've already
239 // printed to std::cerr above.
240 TEUCHOS_TEST_FOR_EXCEPTION(true, std::runtime_error, "");
241 }
242 else if (gblSuccess == 0) {
243 TEUCHOS_TEST_FOR_EXCEPTION
244 (gblSuccess != 1, std::runtime_error,
245 "getLocalDiagCopyWithoutOffsetsNotFillComplete failed on "
246 "one or more MPI processes in the matrix's communicator.");
247 }
248 }
249 else { // ! debug
250 functor_type functor (lclNumErrs, diag, A);
251 }
252
253 return lclNumErrs;
254}
255
256} // namespace Details
257} // namespace Tpetra
258
259// Explicit template instantiation macro for
260// getLocalDiagCopyWithoutOffsetsNotFillComplete. NOT FOR USERS!!!
261// Must be used inside the Tpetra namespace.
262#define TPETRA_DETAILS_GETDIAGCOPYWITHOUTOFFSETS_INSTANT( SCALAR, LO, GO, NODE ) \
263 template LO \
264 Details::getLocalDiagCopyWithoutOffsetsNotFillComplete< SCALAR, LO, GO, NODE > \
265 ( ::Tpetra::Vector< SCALAR, LO, GO, NODE >& diag, \
266 const ::Tpetra::RowMatrix< SCALAR, LO, GO, NODE >& A, \
267 const bool debug);
268
269#endif // TPETRA_DETAILS_GETDIAGCOPYWITHOUTOFFSETS_DEF_HPP
Declaration of a function that prints strings from each process.
A distributed graph accessed by rows (adjacency lists) and stored sparsely.
An abstract interface for graphs accessed by rows.
A distributed dense vector.
base_type::impl_scalar_type impl_scalar_type
The type used internally in place of Scalar.
Node::device_type device_type
The Kokkos device type.
base_type::map_type map_type
The type of the Map specialization used by this class.
Implementation details of Tpetra.
LO getLocalDiagCopyWithoutOffsetsNotFillComplete(::Tpetra::Vector< SC, LO, GO, NT > &diag, const ::Tpetra::RowMatrix< SC, LO, GO, NT > &A, const bool debug=false)
Given a locally indexed, global sparse matrix, extract the matrix's diagonal entries into a Tpetra::V...
void gathervPrint(std::ostream &out, const std::string &s, const Teuchos::Comm< int > &comm)
On Process 0 in the given communicator, print strings from each process in that communicator,...
Namespace Tpetra contains the class and methods constituting the Tpetra library.